Title: Standardized Data Run Release Notes  
Owner: Former user
Creator: Former user 2011-12-22
Last Changed by: Former user 2016-10-18
Tiny Link: (useful for email) https://broadinstitute.atlassian.net/wiki/x/8IJTMg
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Broad TCGA GDAC (3)
    Page: Analysis Run Release Notes
    Page: FAQ
    Page: Rationale for stddata Runs
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2016-10-18 09:02 Former user View Changes
2016-10-13 11:27 Former user View Changes
2016-03-02 19:44 Former user View Changes
2016-03-02 19:29 Former user View Changes
2015-12-21 13:42 Former user  
Outgoing Links
External Links (86)
    https://confluence.broadinstitute.org/display/GDAC/Standard…
    firebrowse.org/api/v1/Samples/ClinicalTier1
    gdac.broadinstitute.org/runs/stddata__2014_07_15/samples_re…
    gdac.broadinstitute.org/runs/stddata__2014_12_06/samples_re…
    https://tcga-data.nci.nih.gov/tcgafiles/ftp_auth/distro_ftp…
    cancergenome.nih.gov/newsevents/multimedialibrary/videos/Fr…
    firebrowse.org/api-docs/#!/Samples/mRNASeq
    gdac.broadinstitute.org/runs/stddata__2012_03_21/ingested_d…
    gdac.broadinstitute.org
    https://confluence.broadinstitute.org/display/GDAC/MAF+Dash…
    gdac.broadinstitute.org/runs/stddata__2014_09_02/samples_re…
    gdac.broadinstitute.org/runs/stddata__2015_08_21/samples_re…
    firebrowse.org/
    firebrowse.org
    gdac.broadinstitute.org/runs/stddata__2013_11_14/samples_re…
    gdac.broadinstitute.org/runs/stddata__2015_04_02/samples_re…
    en.wikipedia.org/wiki/Cross-origin_resource_sharing
    gdac.broadinstitute.org/runs/stddata__2013_08_09/samples_re…
    gdac.broadinstitute.org/runs/stddata__2013_09_23/samples_re…
    https://confluence.broadinstitute.org/display/GDAC/mail/465…
    www.broadinstitute.org/collaboration/gcc/about-us/contact-u…
    gdac.broadinstitute.org/runs/stddata__2013_05_23/samples_re…
    gdac.broadinstitute.org/runs/code/firehose_get.html
    gdac.broadinstitute.org/runs/stddata__2014_06_14/samples_re…
    https://confluence.broadinstitute.org/display/GDAC/Standard…
    https://confluence.broadinstitute.org/download/attachments/…
    firebrowse.org/api-docs/#!/Analyses/SMG
    www.broadinstitute.org/igv/
    firebrowse.org/api-docs/Samples
    https://confluence.broadinstitute.org/display/GDAC/Standard…
    firebrowse.org/api/v1/Samples/Clinical_FH
    gdac.broadinstitute.org/runs/stddata__2013_04_06/samples_re…
    gdac.broadinstitute.org/runs/stddata__2015_06_01/samples_re…
    gdac.broadinstitute.org/runs/stddata__2014_04_16/samples_re…
    firebrowse.org/?cohort=MESO&download_dialog=true
    gdac.broadinstitute.org/runs/stddata__2014_10_17/samples_re…
    https://tcga-data.nci.nih.gov/annotations
    gdac.broadinstitute.org/
    gdac.broadinstitute.org/runs/stddata__2015_02_04/samples_re…
    gdac.broadinstitute.org/runs/stddata__2014_05_18/samples_re…
    gdac.broadinstitute.org/runs/stddata__2012_10_24
    https://wiki.nci.nih.gov/display/TCGA/Release+1.39.1#Releas…
    gdac.broadinstitute.org/runs/stddata__2015_11_01/samples_re…
    firebrowse.org/api/v1/Metadata/Counts?format=json&date=2015…
    https://confluence.broadinstitute.org/display/GDAC/Download
    gdac.broadinstitute.org/runs/stddata__2013_07_15/samples_re…
    https://wiki.nci.nih.gov/display/TCGAM/Firehose+AWG+Runs
    mailto:gdac@broadinstitute.org
    gdac.broadinstitute.org/runs/stddata__2013_12_10/samples_re…
    gdac.broadinstitute.org/runs/stddata__2013_06_06/samples_re…
    gdac.broadinstitute.org/runs/stddata__2013_04_21/samples_re…
    gdac.broadinstitute.org/runs/stddata__2013_05_08/samples_re…
    gdac.broadinstitute.org/runs/stddata__2014_01_15/samples_re…
    www.broadinstitute.org/oncotator/
    https://confluence.broadinstitute.org/x/KZPcAQ
    https://confluence.broadinstitute.org/display/GDAC/Planned+…
    firebrowse.org/api/v1/Samples/Clinical
    gdac.broadinstitute.org/runs/stddata__2016_01_28/samples_re…
    firebrowse.org/api/v1/Samples/mRNASeq?format=json&gene=dumm…
    gdac.broadinstitute.org/runs/stddata__2014_02_15/samples_re…
    firebrowse.org/api-docs/#!/Analyses/MAF
    gdac.broadinstitute.org/runs/info/clinical
    https://confluence.broadinstitute.org/display/GDAC/FAQ#FAQ-…
    https://confluence.broadinstitute.org/display/GDAC/Analysis…
    firebrowse.org/api-docs/#!/Archives/StandardData
    firebrowse.org/api-docs/#!/Samples/ClinicalTier1
    firebrowse.org/?cohort=ACC&download_dialog=true
    firebrowse.org/api-docs/#!/Metadata/Barcode
    dm5migu4zj3pb.cloudfront.net/manuscripts/68000/68509/JCI685…
    firebrowse.org/api-docs/#!/Metadata/SampleTypes
    firebrowse.org/api-docs/#!/Samples/miRSeq
    firebrowse.org/api-docs/#!/Analyses/mRNASeq_Quartiles
    gdac.broadinstitute.org/runs/stddata__2012_04_25/redactions…
    firebrowse.org/api-docs/Samples/mRNASeq
    firebrowse.org/api-docs/#!/Metadata/HeartBeat
    https://confluence.broadinstitute.org/display/GDAC/fbget
    gdac.broadinstitute.org/runs/stddata__2012_12_06/samples_re…
    gdac.broadinstitute.org/runs/stddata__2012_10_24/redactions…
    firebrowse/api-docs/#!/Metadata/Tier1CDES
    gdac.broadinstitute.org/runs/stddata__2013_04_06/samples_re…
    gdac.broadinstitute.org/runs/stddata__2014_03_16/samples_re…
    all.na/
    https://docs.google.com/spreadsheet/ccc?key=0AqFTJjV2VzMEdH…
    gdac.broadinstitute.org/runs/stddata__2013_06_23/samples_re…
    gdac.broadinstitute.org/runs/stddata__2013_10_10/samples_re…
    cancergenome.nih.gov/cancersselected/biospeccriteria
Broad TCGA GDAC (5)     Page: Analysis Run Release Notes
    Page: Standardized Data Run Release Notes
    Page: FAQ
    Page: Download
    Page: MAF Dashboard