MAF Dashboard

Owned by David Heiman
Last updated: 2017-04-14 by Former user (Deleted)

All MAFs on this page encapsulate Legacy TCGA exome samples called against HG19.  At present we do not serve whole genome or HG38 MAFs. Sample counts reflect the source MAFs prior to Firehose ingest; the counts may be reduced during ingest & processing, due to redactions, blacklisting, et cetera. The final counts of samples ingested into Firehose are given in our sample reports.

MAFs Ingested into Broad GDAC Firehose as of 10 March 2016

Tumor Type

Center

Tumor Samples

Normal Samples

Mutations

Columns

File Name

Size

Last Modified

md5sum

ACC

BLCA

BRCA

CESC

CHOL

COAD

DLBC

ESCA

GBM

HNSC

KICH

KIRC

KIRP

LAML

LGG

LIHC

LUAD

LUSC

OV

PAAD

PCPG

PRAD

READ

SARC

SKCM

STAD

TGCT

THCA

THYM

UCEC

UCS

UVM

bcm.edu

90

90

20166

52

hgsc.bcm.edu_ACC.IlluminaGA_DNASeq.1.somatic.maf.txt

7.7MB

02 Oct 2014

0851ed2831c86203b61dfd0f77d30737

broad.mit.edu

130

130

39312

95

BLCA130_somatic_updated.aggregated.capture.tcga.uuid.curated.somatic.maf.txt

34.8MB

23 Apr 2014

3c4584f577916f340e6c562d4a708a7e

broad.mit.edu

396

411

138723

90

PR_TCGA_BLCA_PAIR_Capture_All_Pairs_QCPASS_v6.hugo_entrez_remapped.aggregated.capture.tcga.uuid.automated.somatic.maf.txt

133.3MB

03 Apr 2015

8c2a33e5a266a63e383fe47170fab153

genome.wustl.edu

993

1032

90490

67

genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.1.1.0.curated.somatic.maf.txt

52.0MB

08 Feb 2014

f823427c6ea3d520fb72379da8ba63dd

genome.wustl.edu

194

194

46547

57

genome.wustl.edu_CESC.IlluminaGA_DNASeq_curated.Level_2.1.0.0.somatic.maf.txt

24.0MB

22 Aug 2014

47f3a41c53d1d8a36004d7311b4c4a29

bcm.edu

35

35

6755

48

hgsc.bcm.edu_CHOL.IlluminaGA_DNASeq.1.somatic.maf.txt

2.4MB

01 Apr 2015

8db4269d8aba6d8d397e2761e24e8e6e

bcm.edu

214

214

140005

34

hgsc.bcm.edu_COAD.IlluminaGA_DNASeq.1.somatic.maf.txt

38.6MB

14 Apr 2015

c0333eebd4fadea249acdd7334b3fb63

bcm.edu

53

53

10986

41

hgsc.bcm.edu_COAD.SOLiD_DNASeq.1.somatic.maf.txt

3.4MB

24 Mar 2015

35d3d4fcc399b0ef97cd76dd564e09c0

bcm.edu

53

53

11578

39

hgsc.bcm.edu-COAD-from-BCM-Firehose-CRC-08nov11.maf.txt

2.8MB

18 Dec 2012

6065b55a82518412be125d55a6307179

broad.mit.edu

102

102

48984

39

broad.mit.edu_COAD.IlluminaGA_DNASeq.1.somatic.maf.txt

12.3MB

14 Apr 2015

56e71be70523c470c9948ecfbb4a4ed1

broad.mit.edu

102

102

50982

39

hgsc.bcm.edu_COAD.IlluminaGA_DNASeq.1.broad.mit.edu.maf.txt

12.8MB

23 Jul 2012

b55060ac2c5f4d203faec91622a2b427

bcm.edu

48

48

16918

55

hgsc.bcm.edu_DLBC.IlluminaGA_DNASeq.1.somatic.maf.txt

7.1MB

05 Oct 2015

d9a9086ae669d0d403d544d540547d8c

genome.wustl.edu

185

185

58602

67

genome.wustl.edu_ESCA.IlluminaHiSeq_DNASeq_automated.1.1.0.somatic.maf.txt

32.8MB

05 Oct 2015

9676eb185183425c1ca70bc8d04cace7

broad.mit.edu

291

291

22166

79

gbm_liftover.aggregated.capture.tcga.uuid.somatic.maf.txt

19.2MB

01 Mar 2013

1ee5e9b937ef29b1b3ccc0f6b454f886

broad.mit.edu

291

291

22166

79

step4_gbm_liftover.aggregated.capture.tcga.uuid.maf2.4.migrated.somatic.maf.txt

22.3MB

01 Apr 2015

ccc87a23df3f6f00e0e3554d1bc892d2

broad.mit.edu

279

279

51799

89

pair_set_279_freeze_Mar262013.aggregated.capture.tcga.uuid.curated.somatic.maf.txt

46.5MB

08 Oct 2015

f5d442f5740b52fd378c1c9fc38a8763

broad.mit.edu

512

569

120402

90

HNSC_pairs.hugo_entrez_remapped.aggregated.capture.tcga.uuid.automated.somatic.maf.txt

116.2MB

08 Sep 2015

e6752295a191d60370b8f2109424dde3

bcm.edu

66

66

7559

36

hgsc.bcm.edu_KICH.IlluminaGA_DNASeq.1.somatic.maf.txt

2.7MB

01 Apr 2015

aeb06b199e6269e5acd8252516c20c12

bcm.edu

66

66

7559

36

hgsc.bcm.edu_KICH.IlluminaGA_DNASeq.1.somatic.maf.txt

2.7MB

27 Oct 2014

aeb06b199e6269e5acd8252516c20c12

bcm.edu

120

120

7216

35

hgsc.bcm.edu_KIRC.SOLiD_DNASeq.1.somatic.maf.txt

2.0MB

21 Jun 2013

fed13b3c80ead3d44af2d81bd90a7b5c

bcm.edu

120

120

7216

35

hgsc.bcm.edu_KIRC.SOLiD_DNASeq.1.somatic.maf.txt

2.0MB

24 Mar 2015

fed13b3c80ead3d44af2d81bd90a7b5c

bcm.edu

189

189

9049

35

hgsc.bcm.edu_KIRC.IlluminaGA_DNASeq.1.somatic.maf.txt

2.6MB

21 Jun 2013

ad0dfabf944888699af7c5170d056ec8

bcm.edu

372

372

21611

35

hgsc.bcm.edu_KIRC.IlluminaGA_DNASeq.1.somatic.maf.txt

6.3MB

24 Mar 2015

cc7e6cb98a67e712568c37664bb248d7

broad.mit.edu

183

183

12562

35

broad.mit.edu_KIRC.IlluminaGA_DNASeq.1.somatic.maf.txt

3.7MB

21 Jun 2013

e20bc14d4a210ba329017eba10849111

broad.mit.edu

57

67

21559

90

PR_TCGA_KIRC_PAIR_Capture_All_Pairs_QCPASS_v3.hugo_entrez_remapped.aggregated.capture.tcga.uuid.automated.somatic.maf.txt

20.5MB

24 Mar 2015

5c614f4d5cb8f2a83201103d42f06ec4

bcm.edu

161

161

15585

52

hgsc.bcm.edu_KIRP.IlluminaGA_DNASeq.1.somatic.maf.txt

5.8MB

06 Oct 2014

3ddcaf0557a6fb8b8e553a950991b263

bcm.edu

282

282

18878

56

hgsc.bcm.edu_KIRP.IlluminaGA_DNASeq.1.somatic.maf.txt

7.3MB

30 Oct 2015

3e069d1dc542491061a3ee1f1ad3b12a

genome.wustl.edu

197

197

2585

64

genome.wustl.edu_LAML.IlluminaGA_DNASeq.Level_2.2.13.0.somatic.maf.txt

1.5MB

09 Dec 2013

ab6c720a25fbf438a78133a0011469ec

broad.mit.edu

286

286

9885

38

LGG_FINAL_ANALYSIS.aggregated.capture.tcga.uuid.curated.somatic.maf.txt

3.0MB

13 Jan 2015

4b0844f47131ecb12426069a8d93165a

broad.mit.edu

533

516

50255

90

LGG_pairs.aggregated.capture.tcga.uuid.automated.somatic.maf.txt

49.0MB

05 Jan 2016

a47c5cb84436069da8d3b2c52419d3b8

bcm.edu

198

198

27892

48

hgsc.bcm.edu_LIHC.IlluminaGA_DNASeq.1.somatic.maf.txt

10.8MB

12 Sep 2014

b8d47374da88802fb8d1bd904d88df8f

bcm.edu

373

373

53777

51

hgsc.bcm.edu_LIHC.IlluminaGA_DNASeq.1.somatic.maf.txt

20.0MB

08 Oct 2015

8abf315525e8762004b82a5d4759850d

broad.mit.edu

230

230

72541

91

AN_TCGA_LUAD_PAIR_capture_freeze_FINAL_230.aggregated.capture.tcga.uuid.curated.somatic.maf.txt

64.6MB

03 Dec 2014

82873d928fd40677e8ef0de26ae8c63c

broad.mit.edu

561

606

255972

90

PR_TCGA_LUAD_PAIR_Capture_All_Pairs_QCPASS_v4.hugo_entrez_remapped.aggregated.capture.tcga.uuid.automated.somatic.maf.txt

241.8MB

24 Mar 2015

4439b81fdb5073248186e977c70eb789

broad.mit.edu

178

178

65305

86

LUSC_Paper_v8.aggregated.tcga.somatic.maf.txt

55.4MB

20 Feb 2013

a77f0045ee8341c4fd852a8ce0d0ab09

bcm.edu

80

82

3992

44

AN_PAPER_OV_489.hgsc.bcm.edu_20111118.maf.txt

1.0MB

18 Dec 2012

e9289788b76db195b4476db3a1142404

bcm.edu

91

91

3557

34

hgsc.bcm.edu_OV.SOLiD_DNASeq.1.somatic.maf.txt

984.4KB

24 Mar 2015

4feca0fb9fb9dddbcd04d76f6ee886c5

broad.mit.edu

142

142

6308

34

broad.mit.edu_OV.IlluminaGA_DNASeq.Level_2.7.somatic.maf.txt

1.8MB

24 Mar 2015

0d71eaab5be42d3ee79722617dea9529

broad.mit.edu

148

148

9851

44

AN_PAPER_OV_489.broad.mit.edu_20111118.maf.txt

2.3MB

18 Dec 2012

a8cddecdcc25050d22d7149403d99280

genome.wustl.edu

236

236

18045

55

genome.wustl.edu_OV.IlluminaGA_DNASeq.2.somatic.maf.txt

8.9MB

24 Mar 2015

2226c4e6d70d2ecd9ce6827a3e719d0a

genome.wustl.edu

88

88

6376

44

AN_PAPER_OV_489.genome.wustl.edu_20111118.maf.txt

1.7MB

18 Dec 2012

2bc6f441239abf10c3963535a28237eb

broad.mit.edu

150

150

30357

245

freeze3.aggregated.capture.tcga.uuid.curated.somatic.maf.txt

47.2MB

26 Jan 2016

37885947e777e844e0003f68fc777399

broad.mit.edu

185

189

70047

90

PAAD_pairs.aggregated.capture.tcga.uuid.automated.somatic.maf.txt

65.2MB

03 Dec 2015

f5c622fdf218713231a707c3a4e957b1

broad.mit.edu

184

182

4662

90

PCPG_pairs.hugo_entrez_remapped.aggregated.capture.tcga.uuid.automated.somatic.maf.txt

4.1MB

08 Sep 2015

62a2ed575906b6d089f51a1f60e952c0

broad.mit.edu

332

332

12348

85

PRAD_Capture_All_Pairs_QCPASS_v6_Nikki_Nov_25.hugo_entrez_remapped.aggregated.capture.tcga.uuid.curated.somatic.maf.txt

12.0MB

07 Apr 2015

72d385811ace3d19dc176ea89efae785

broad.mit.edu

499

546

40731

90

PRAD_pairs.aggregated.capture.tcga.uuid.automated.somatic.maf.txt

38.2MB

03 Dec 2015

8314f1aefa84fd3f9461c9b5cfc4544f

bcm.edu

35

35

9287

41

hgsc.bcm.edu_READ.SOLiD_DNASeq.1.somatic.maf.txt

2.9MB

24 Mar 2015

4647a72739535202046dd0645b8bcf78

bcm.edu

35

35

9460

39

hgsc.bcm.edu-READ-from-BCM-Firehose-CRC-08nov11.maf.txt

2.3MB

18 Dec 2012

40f57301c0345948fcd731b74c26646c

bcm.edu

53

53

12437

34

hgsc.bcm.edu_READ.IlluminaGA_DNASeq.1.somatic.maf.txt

3.5MB

24 Mar 2015

fc08dc07ecc2a7de4edfaa7a4c23b100

broad.mit.edu

38

38

19625

39

hgsc.bcm.edu_READ.IlluminaGA_DNASeq.1.somatic.maf.txt

4.9MB

24 Mar 2015

f9ebc047eef8f33b6f1ce6725c7d17a1

broad.mit.edu

38

38

19953

39

broad.mit.edu-READ-from-BCM-Firehose-CRC-08nov11.maf.txt

4.7MB

25 Nov 2011

b304798b82f4b503e09997371c7cab46

genome.wustl.edu

247

247

20099

73

genome.wustl.edu_SARC.IlluminaHiSeq_DNASeq_automated.1.5.0.somatic.maf.txt

11.9MB

09 Mar 2016

3ddbc2dcf87b51b1dff68566afa62d08

broad.mit.edu

346

345

290341

90

skcm_clean_pairs.aggregated.capture.tcga.uuid.somatic.maf.txt

282.7MB

15 Nov 2013

a2afad3719c3507170a718b0fa5138f9

broad.mit.edu

369

369

324163

90

PR_TCGA_SKCM_PAIR_Capture_All_Pairs_QCPASS_v4.hugo_entrez_remapped.aggregated.capture.tcga.uuid.automated.somatic.maf.txt

305.5MB

24 Mar 2015

71aa8527cb698bffef1fc99fb0d3d9d1

broad.mit.edu

289

289

148520

79

QCv5_blacklist_Pass.aggregated.capture.tcga.uuid.curated.somatic.maf.txt

128.7MB

05 Mar 2015

ef02d98be7388051e5fe3a98e1520777

broad.mit.edu

395

395

209217

67

genome.wustl.edu_STAD.IlluminaHiSeq_DNASeq_automated.1.3.0.somatic.maf.txt

118.9MB

08 Dec 2015

aba29a1df4cdc9087b4888d89471d539

bcm.edu

155

149

14672

57

hgsc.bcm.edu_TGCT.IlluminaGA_DNASeq.1.somatic.maf.txt

5.3MB

24 Mar 2015

19073e0848820c0becf005e3212828ca

broad.mit.edu

405

425

7458

90

AN_TCGA_THCA_PAIR_Capture_ALLQC_14Aug2013_429.aggregated.capture.tcga.uuid.somatic.maf.txt

8.1MB

18 Sep 2013

3edf75d78bed78876a12808ab710ca01

broad.mit.edu

504

526

15908

90

THCA_pairs.aggregated.capture.tcga.uuid.automated.somatic.maf.txt

14.6MB

03 Dec 2015

3670cab64ac5680cb3aae1b5bd14e470

genome.wustl.edu

123

123

3064

70

genome.wustl.edu_THYM.IlluminaGA_DNASeq_curated.Level_2.1.1.0.somatic.maf.txt

1.7MB

20 Jan 2016

f5172b67ae045ee0171598faf4bd8dd7

genome.wustl.edu

248

248

184861

49

genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.1.7.somatic.maf.txt

73.7MB

19 Jul 2013

dd28fc297e773dd72d23ef5d9385e117

broad.mit.edu

57

57

9149

101

PR_TCGA_UCS_PAIR_Capture_All_Pairs.aggregated.capture.tcga.uuid.curated.somatic.maf.txt

9.6MB

24 Feb 2016

920602d11712f8fe1ea921e937a491f7

broad.mit.edu

80

80

2174

205

PR_TCGA_UVM_PAIR_Capture_All_Pairs.aggregated.capture.tcga.uuid.curated.somatic.maf.txt

4.3MB

08 Oct 2015

395723d5b8946a5f7a0d43df746ba099

 

 Click here for DCC archive versioning information
  • Format: <Serial Index>.<Revision>.0
  • Serial Index:
    • WashU: Increments after each Data Freeze by the AWG, all uploaded MAFs are AWG-curated
    • Broad: 0 indicates Auto-GSC generated MAF, 1 indicates AWG-curated MAF
    • Baylor: ?
  • Revision:
    • WashU: Changes since last Data Freeze (resets with increment of Serial Index)
    • Broad: Current data revision (archive version 1.n.0 based on archive version 0.n.0)
    • Baylor: ?
    • DCC: May increment after any auto-processing (e.g. converting from v2.2 to v2.3)

MAFs Available from TCGA DCC as of 03 June 2016, now mostly hosted at the GDC

Tumor Type

Center

Tumor Samples

Normal Samples

Mutations

Columns

Archive Version

File Name

Size

Last Modified

md5sum

ACC

BLCA

BRCA

CESC

CHOL

COAD

DLBC

ESCA

FPPP

GBM

HNSC

KICH

KIRC

KIRP

LAML

LGG

LIHC

LUAD

LUSC

MESO

OV

PAAD

PCPG

PRAD

READ

SARC

SKCM

STAD

TGCT

THCA

THYM

UCEC

UCS

UVM

bcgsc.ca

92

92

12982

35

1.0.0

bcgsc.ca_ACC.IlluminaHiSeq_DNASeq.1.somatic.maf

3.8MB

27-Apr-16

acb7549304318d3b3d2d0a5466c47a16

broad.mit.edu

91

91

13129

90

1.0.0

An_TCGA_ACC_External_capture_All_Pairs.aggregated.capture.tcga.uuid.curated.somatic.maf

12.1MB

3-Mar-14

8960de8eaddf25b8256a23a4c7cd761f

broad.mit.edu

92

92

12363

90

1.0.0

gsc_ACC_pairs.aggregated.capture.tcga.uuid.automated.somatic.maf

11.4MB

31-May-16

c59b459f501da8fcf32eaa711619e81d

hgsc.bcm.edu

90

90

20166

52

1.1.0

hgsc.bcm.edu_ACC.IlluminaGA_DNASeq.1.somatic.maf

7.7MB

29-Sep-14

0851ed2831c86203b61dfd0f77d30737

hgsc.bcm.edu

90

90

8225

48

1.0.0

hgsc.bcm.edu_ACC.IlluminaGA_DNASeq.1.somatic.maf

3.0MB

5-Dec-13

2af7f17e683f4b2b35b5dcc45d13104f

hgsc.bcm.edu

91

91

10915

49

1.3.0

hgsc.bcm.edu_ACC.IlluminaGA_DNASeq.1.somatic.maf

4.0MB

29-Sep-15

bb57693890416f2ff3cb3600826c0cfd

bcgsc.ca

405

404

132412

34

1.0.0

bcgsc.ca_BLCA.IlluminaHiSeq_DNASeq.1.somatic.maf

35.9MB

23-Apr-15

21ad0a0738ae849c587abdf0c7704e99

bcgsc.ca

416

412

135257

35

1.0.0

bcgsc.ca_BLCA.IlluminaHiSeq_DNASeq.1.somatic.maf

38.1MB

29-Apr-16

faef9c62ac5200ced887ecc21ca2714b

broad.mit.edu

130

130

39312

95

1.4.0

BLCA130_somatic_updated.aggregated.capture.tcga.uuid.curated.somatic.maf

34.8MB

21-Apr-14

3c4584f577916f340e6c562d4a708a7e

broad.mit.edu

159

167

51295

90

0.3.0

PR_TCGA_BLCA_PAIR_Capture_All_Pairs_QCPASS_v3.aggregated.capture.tcga.uuid.somatic.maf

51.4MB

15-Jul-13

d3eb70b940fbec38a934bb6d41a1fb95

broad.mit.edu

28

28

7557

86

1.3.0

BLCA-28-original.aggregated.tcga.somatic.maf

6.5MB

9-Jan-13

816f494b9caf23b944249651a7d2cded

broad.mit.edu

419

431

148471

90

1.6.0

gsc_BLCA_pairs.aggregated.capture.tcga.uuid.automated.somatic.maf

142.5MB

27-May-16

471bae2d300d8e766a89602fde87b224

broad.mit.edu

1092

1132

242475

90

1.0.0

gsc_BRCA_pairs.aggregated.capture.tcga.uuid.automated.somatic.maf

220.2MB

31-May-16

b48a6f15d18fa60623dc6f2af14a9460

genome.wustl.edu

107

109

7746

54

2.1.0

genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.0.0.maf

4.0MB

9-Oct-12

1d662b8319e3a2672db293b15252ed4f

genome.wustl.edu

510

546

33963

55

3.3.0

genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.3.2.0.somatic.maf

17.8MB

11-Oct-12

dbc316c2f817dfc4284df434a5d152c8

genome.wustl.edu

776

801

47243

55

1.4.0

genome.wustl.edu_BRCA.IlluminaHiSeq_DNASeq_automated.1.4.0.somatic.maf

24.6MB

21-Dec-15

5d6283c8e28f9c1e2ddaa55f4b773b88

genome.wustl.edu

776

801

47243

55

5.3.0

genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.5.3.0.somatic.maf

24.6MB

24-Jun-13

5d6283c8e28f9c1e2ddaa55f4b773b88

genome.wustl.edu

993

1032

90490

67

1.1.0

genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.1.1.0.curated.somatic.maf

52.0MB

6-Feb-14

f823427c6ea3d520fb72379da8ba63dd

bcgsc.ca

199

198

68621

34

1.0.0

bcgsc.ca_CESC.IlluminaHiSeq_DNASeq.1.somatic.maf

19.2MB

25-Jun-14

c25bb0dbd47aead8aca1f70aa371cde0

broad.mit.edu

307

308

97933

90

1.8.0

gsc_CESC_pairs.aggregated.capture.tcga.uuid.automated.somatic.maf

90.0MB

26-May-16

fdf1c2d248f8da7229e9f21bc95df96d

broad.mit.edu

39

39

10020

90

1.4.0

PR_TCGA_CESC_PAIR_Capture_All_Pairs.aggregated.capture.tcga.uuid.somatic.maf

8.1MB

12-Nov-12

1b13e812e746b9149b15090b48d2de1e

broad.mit.edu

40

40

11599

90

0.5.0

PR_TCGA_CESC_PAIR_Capture_All_Pairs_QCPASS_v3.aggregated.capture.tcga.uuid.somatic.maf

11.1MB

16-Jul-13

522bd0522b1ee4df5f1f1e2871d4fe9b

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