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In Progress NOTCH2NLC Gene Curation

In Progress NOTCH2NLC Gene Curation

Gene-disease assertions not curated here (add link or write note): CURATED FOR NORMAL RANGE ONLY FOR VALIDATION

Disease

Hereditary essential tremor type 6 and Neuronal intranuclear inclusion disease

Disease

Hereditary essential tremor type 6 and Neuronal intranuclear inclusion disease

Inheritance

Autosomal dominant

Prevalence

 

Source:

Rapid or full curation?

Rapid
Full

ClinGen / GenCC / BabySeq / HGMD / OMIM

 

Clinical Validity Scoring Notes and points

Variant/Case Evidence:

Segregation Evidence:

Case/Control Evidence:

Experimental Evidence:

Source:

Clinical Validity Points Total

 

Source:

Clinical Validity Classification

Definitive (12pts)

Strong (12pts)

Moderate (7-11pts)

Limited (0.1-6pts)

No genetic evidence

Refuted

Disputed

 

Source:

Molecular Mechanism

Loss of function

Gain of function

Dominant negative

Unknown

Other

Loss of function / Gain of function / Dominant Negative

 

Tandem repeat expansion of GGC in 5’UTR

  • Normal ≤39

 

Review:

  • STRchive - normal max 39

  • Stripy

    • Hereditary essential tremor: Normal 4-41; path ≥60

    • Neuronal intranuclear inclusion disease (NIID): Normal 7-39, path ≥90

  • GnomAD

    • Hereditary essential tremor: Normal 4-41; path ≥60

    • Neuronal intranuclear inclusion disease (NIID): Normal 7-39, path ≥90

 

 

Penetrance

Complete (100%)

High (≥80%)

Moderate  (<80% and >20%)

Low (≤20%)

(list source/PMID)

 

Source:

Age of Onset

Congenital

Pediatric

Adolescent

Adulthood

Late adulthood

(list source/PMID)

 

Severity

 

Clinical Features

 

Sources:

HPO Terms

https://hpo.jax.org/app/

 

Gene SOPs & Notes

 LINK if SOP is a long document. Short notes if it is easy to digest. eg. Last known truncating variant

Curation Summary

 

Case ID, Curator name, Date, Jira ticket link