This page is the graveyard of content from the GDAC "Internal" page that is no longer relevant, because it applied mainly to the Legacy TCGA phase of our GDAC. It's being kept here, rather than thrown away, just in case. The aim is that no content be duplicated, i.e. each piece of content on the Internal page will either (a) remain there or (b) be moved here.
| Directory | Description |
|---|---|
/xchip/gdac_data/dcc_mirror3 | Root directory of our legacy TCGA mirroring tree (DCC is no longer active). |
.../platform_link/other/gdacs/gdacbroad | Location to which our FH results are mirrored: corresponds to this URL at DCC |
/xchip/cga/reference/tcga | Top level of tree which contains static-ish "reference data" for FH tasks: manually curated, or culled from external sources, but NOT fed from GDAC ingestor OR generated at runtime by GDAC FH tasks at. Some examples of the kinds of data we store in the reference tree are:
|
| Top level of gdac.broadinstitute.org |
/xchip/gdac_data/dcc_mirror3/control/gdacIngestor.cfg | GDAC ingestor config file (see gdac1 cron table) |
CONSOLIDATE_MULTIPLE_BUILD_PAGES_INTO_1_WITH_NEW_JULY_2014_RECIPE
/wiki/spaces/GDAC/pages/844333321
/wiki/spaces/GDAC/pages/844333278
iCoMut - iComutDesign.pptx
/wiki/spaces/GDAC/pages/844333990
/wiki/spaces/GDAC/pages/844334009
/wiki/spaces/GDAC/pages/844333685
/wiki/spaces/GDAC/pages/844334179
/wiki/spaces/GDAC/pages/844333704
Module and Pipeline Continuous Integration using Bamboo
/wiki/spaces/GDAC/pages/844334026
/wiki/spaces/GDAC/pages/844334169
/wiki/spaces/GDAC/pages/844333172
/wiki/spaces/GDAC/pages/844334056
2 February 2016 | Sam Meier | |
1 March 2016 | Tim DeFreitas | |
14 June 2016 | David Heiman | |
2 August 2016 | Mike Noble | |
| Revamped R & best practices | Sam Meier | |
| expression analysis in GDC era | Hailei Zhang | |
6 September 2016 28 September 2017 | Building the Digital Tower: Applying Object Oriented Programming and Functional Programming | Kane Hadley Gordon Saksena |