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The content and subpages given here describe and refer to legacy operations of the Broad GDAC, i.e. essentially TCGA.
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GDAC Workspaces and Runs (old planning) /wiki/spaces/GDAC/pages/844333359 /wiki/spaces/CGA/pages/846299338 |
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The CentOS
#0 0 * * * ~gdac/bin/choose_dotkit R-2.15 ~gdac/bin/gdac_ingestor --dcc --dccxml --dice /xchip/gdac_data/dcc_mirror3/control/gdacIngestor.cfg && ~gdac/bin/gdac_maf_dashboard MAILTO=mnoble@broadinstitute.org,dheiman@broadinstitute.org,timdef@broadinstitute.org # Several entries have been moved to vgdac1 crontab: # */15 * * * * umask 002; nice ~gdac/bin/gdac_run_logger -a -l ~gdac/logs/gdac_cron_awg ~gdac/bin/gdac_cron awg monitor # 30 */4 * * * nice ~gdac/bin/gdac_data -R > $HOME/runs/sampleReports/all.html # */10 * * * * ~gdac/bin/gdac_monitor -m -p $HOME/runs/operations/gdac_monitor_output.html # 0 6 * * * ~gdac/bin/gdac_jira -c analyses -w -p $HOME/runs/operations/gdac_jira_report -f # 0 1 * * 6 find /broad/hptmp/gdac/mongo3_fbdev_db -exec touch {} \; # 0 2 * * 6 find /broad/hptmp/gdac/fh2gdc -exec touch {} \; # 30 8 * * * ~gdac/bin/gdac_tester /xchip/tcga/Tools/gdac/tester/configs/testGDACPackages.cfg |