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APTX Gene Curation

APTX Gene Curation

Gene-disease assertions not curated here (add link or write note):

Disease

ataxia, early-onset, with oculomotor apraxia and hypoalbuminemia

Disease

ataxia, early-onset, with oculomotor apraxia and hypoalbuminemia

Inheritance

Autosomal recessive

Prevalence

 

Source:

Rapid or full curation?

Rapid
Full

ClinGen / GenCC / BabySeq / HGMD

ClinGen - no entries

GenCC (accessed 06/14/2023)

  • Definitive (TGMI|G2P)

  • Strong (Genomics England PanelApp)

  • Strong (Invitae)

Clinical Validity Scoring Notes and points

Not evaluated

Clinical Validity Points Total

Not evaluated

Clinical Validity Classification

Definitive (12pts)

Strong (12pts)

Moderate (7-11pts)

Limited (0.1-6pts)

No genetic evidence

Refuted

Disputed

Strong

Source: (GenCC)

Molecular Mechanism

Loss of function

Gain of function

Dominant negative

Unknown

Other

Not evaluated

Penetrance

Complete (100%)

High (≥90%)

Reduced  (<90% and >10%)

Low (≤10%)

(list source/PMID)

Not evaluated

Age of Onset

Congenital

Pediatric

Adolescent

Adulthood

Late adulthood

(list source/PMID)

Not evaluated

Severity

Not evaluated

Clinical Features

Not evaluated

Gene SOPs & Notes

 LINK if SOP is a long document. Short notes if it is easy to digest. eg. Last known truncating variant

Curation Summary:

Not evaluated

Case ID, Curator name, Date, Jira ticket link

Andrea Oza, 06/14/2023 https://broadinstitute.atlassian.net/browse/CIT-127