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DRAGEN DWH Documentation

DRAGEN DWH Documentation

Owned by Mariela Mihaleva
2022-01-19
1 min read

Aggregation metrics

mercurydw.mapping_run_metrics
sample_alias (AoU)= BI_CollaboratorSampleId_PdoSample_1 = BI_A709994827_20220001361_1197298460_1
sample_alias (Bahrain)= CollaboratorSampleId = A709994827_20220001361
read_group = PdoSample_Aggregation = 1197298460_Aggregation
run_name = 1197298460_20-09-10_07-15-17

mercurydw.mapping_rg_metrics
sample_alias (AoU)= BI_CollaboratorSampleId_PdoSample_1 = BI_A237080538_20207003020_1202265804_1
sample_alias (Bahrain)= CollaboratorSampleId = A709994827_20220001361
read_group = FlowcellBarcode.Lane = HFH7LDSXY.3
molecular_index IS NULL

mercurydw.vc_run_metrics
sample_alias (AoU)= BI_CollaboratorSampleId_PdoSample_1 = BI_A237080538_20207003020_1202265804_1
sample_alias (Bahrain)= CollaboratorSampleId = A709994827_20220001361
run_name = 1202265804_20-08-19_17-10-16

mercurydw.gatk_contamination

sample_alias For CRSP portal SAMPLE would be THE PDO SAMPLE
sample_alias For non-CRSP portal samples would be colab SAMPLE id
read_group = SM-I9PAD_Aggregation = PDO-Sample_Aggregation

mercurydw.fingerprint_score
sample_alias = PDO Sample
Run_name = 1202265779_Aggregation