For each data run a new panel should be added here, describing the significant functional or data changes in that analysis run. Mike will cut them from here and paste to the public page upon releasing that run
If sparse, do diffs with last analysis run, to see new tasks/data added (and optionally ask team, via email, to verify). The /wiki/spaces/GDAC/pages/844334194
|
Table from 2013_09_23 analysis run; keep until next run is posted which corrects the GAF 3.0 issues
THCA | SKCM | LGG | KIRP | |||||||||||||||
GAF 2.1 323 Samples 6806 Mutations | GAF 3.0 401 Samples 6736 Mutations | GAF 2.1 228 Samples 189759 Mutations | GAF 3.0 228 Samples 189948 Mutations | GAF 2.1 217 Samples 25172 Mutations | GAF 3.0 220 Samples 23947 Mutations | GAF 2.1 111 Samples 7907 Mutations | GAF 3.0 112 Samples 7367 Mutations | |||||||||||
Rank | Gene | 2.1 Rank | Rank | Gene | 2.1 Rank | Rank | Gene | 2.1 Rank | Rank | Gene | 2.1 Rank | |||||||
1 | NRAS | NRAS | 1 | 1 | C15orf23 | C15orf23 | 1 | 1 | IL32 | TEAD3 | 5275 | 1 | IL32 | KCNK5 | 354 | |||
2 | BRAF | BRAF | 2 | 2 | CDKN2A | POLDIP2 | 6212 | 2 | IDH2 | IL32 | 1 | 2 | CDC27 | CDC27 | 2 | |||
3 | HRAS | HRAS | 3 | 3 | NRAS | NUDT11 | 16950 | 3 | IDH1 | ATRX | 5 | 3 | NF2 | IL32 | 1 | |||
4 | EMG1 | OTUD4 | 793 | 4 | BRAF | CDKN2A | 2 | 4 | TP53 | PRCP | 950 | 4 | PPARGC1B | NF2 | 3 | |||
5 | PTTG1IP | EIF1AX | 14 | 5 | OXA1L | NRAS | 3 | 5 | ATRX | IDH2 | 2 | 5 | SFRS2IP | PPARGC1B | 4 | |||
6 | RPTN | NUP93 | 500 | 6 | TP53 | BRAF | 4 | 6 | CIC | IDH1 | 3 | 6 | MET | PCDHGC5 | 12984 | |||
7 | TG | NLRP6 | 26 | 7 | STK19 | OXA1L | 5 | 7 | FUBP1 | TP53 | 4 | 7 | ELF3 | MET | 6 | |||
8 | TMCO2 | PPM1D | 13 | 8 | PTEN | TTN | 18 | 8 | NOTCH1 | HEATR3 | 239 | 8 | PCF11 | PLAC4 | 36 | |||
9 | R3HDM2 | MUC7 | 17 | 9 | DSG1 | UGT2B15 | 17 | 9 | PIK3R1 | CIC | 6 | 9 | LGI4 | PCF11 | 8 | |||
10 | PRB2 | OR56A1 | 43 | 10 | PPP6C | TP53 | 6 | 10 | PIK3CA | FUBP1 | 7 | 10 | RAB27B | LGI4 | 9 |