General
Create a troubleshooting guide for PDMs/PMs/Analytics to use to determine what is broken (pipeline, ETL, DM refresh, etc)/ Missing data tool ("Where's my data?") (AM/MM/RAS)
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| server | Genomics Platform JIRA |
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| serverId | 69f1c57f-69eb-3638-9293-3b540a90b0e4 |
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key | https://gpinfojira.broadinstitute.org/jira/browse/RPT-4927https://gpinfojira.broadinstitute.org/jira/browse/RPT-5574
Mariela and Rafael are working on this, Nasko is helping.
ETL Resiliency (AM)
https://gpinfojira.broadinstitute.org/jira/browse/RPT-5522
Expand dependency visualizer to be useful (e.g. for use in troubleshooting guide
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| server | Genomics Platform JIRA |
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| columns | key,summary,type,created,updated,due,assignee,reporter,priority,status,resolution |
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| serverId | 69f1c57f-69eb-3638-9293-3b540a90b0e4 |
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| key | RPT-5310 |
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https://gpinfojira.broadinstitute.org/jira/browse/RPT-5310| Jira Legacy |
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| server | Genomics Platform JIRA |
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| columns | key,summary,type,created,updated,due,assignee,reporter,priority,status,resolution |
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| serverId | 69f1c57f-69eb-3638-9293-3b540a90b0e4 |
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keyRPT-5317 | https://gpinfojira.broadinstitute.org/jira/browse/RPT-5317 (RAS) Need to meet with AM and KC to review usefulness
Samples
Sample Initiation in Mercury: Datamarts and Tableau (KC, RAS)
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| server | Genomics Platform JIRA |
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| serverId | 69f1c57f-69eb-3638-9293-3b540a90b0e4 |
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key | https://gpinfojira.broadinstitute.org/jira/browse/RPT-4980| Jira Legacy |
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| server | Genomics Platform JIRA |
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| columns | key,summary,type,created,updated,due,assignee,reporter,priority,status,resolution |
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| serverId | 69f1c57f-69eb-3638-9293-3b540a90b0e4 |
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key | https://gpinfojira.broadinstitute.org/jira/browse/RPT-5390
Ticket TBD for other Pico work once pico is moved to Mercury. KC still a part of those conversations.
Extractions in Mercury: Datamarts and Tableau (KC, MM, RAS) (LIMS dependencies are mitigated with fix in QA 6/19)
| Jira Legacy |
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| server | Genomics Platform JIRA |
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| serverId | 69f1c57f-69eb-3638-9293-3b540a90b0e4 |
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key | https://gpinfojira.broadinstitute.org/jira/browse/RPT-5165| Jira Legacy |
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| server | Genomics Platform JIRA |
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| columns | key,summary,type,created,updated,due,assignee,reporter,priority,status,resolution |
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| serverId | 69f1c57f-69eb-3638-9293-3b540a90b0e4 |
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| key | RPT-5449 |
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https://gpinfojira.broadinstitute.org/jira/browse/RPT-5449
CRSP kits sent/received, data into Tableau
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https://gpinfojira.broadinstitute.org/jira/browse/RPT-4290
Workflow has been defined for CRSP. Now we need to determine whether/where the data are in the MercuryDW. PRIORITY TBD
Non-CRSP Mercury receipt in Tableau
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| server | Genomics Platform JIRA |
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| columns | key,summary,type,created,updated,due,assignee,reporter,priority,status,resolution |
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| serverId | 69f1c57f-69eb-3638-9293-3b540a90b0e4 |
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key | https://gpinfojira.broadinstitute.org/jira/browse/RPT-5389This should be doable using event_fact? received vs imported?
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New Product Development
Quality
| Jira Legacy |
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| server | Genomics Platform JIRA |
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| columns | key,summary,type,created,updated,due,assignee,reporter,priority,status,resolution |
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| serverId | 69f1c57f-69eb-3638-9293-3b540a90b0e4 |
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| key | RPT-5355 |
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Lab Instrument QC (AB)
https://gpinfojira.broadinstitute.org/jira/browse/RPT-4961
3/4 QCs are in Tableau. One waiting for Mercury
Tracking Bravo QC (AB) NOTE: THIS WON'T BE THIS Q
RPT-4961https: 3/4 QCs are in Tableau. One waiting for Mercury//gpinfojira.broadinstitute.org/jira/browse/RPT-5355
Sequencing Technology
Broad West: Show new parsed SAV data in Tableau (KC, RAS)
| Jira Legacy |
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| server | Genomics Platform JIRA |
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| serverId | 69f1c57f-69eb-3638-9293-3b540a90b0e4 |
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key | https://gpinfojira.broadinstitute.org/jira/browse/RPT-5257Data are ready for visualization. It can't be the same report as BroadEast bc data structure is different (e.g. no organic run) but a simple monitoring report should be easy. Early Q1.
| Jira Legacy |
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| server | Genomics Platform JIRA |
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| serverId | 69f1c57f-69eb-3638-9293-3b540a90b0e4 |
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key | https://gpinfojira.broadinstitute.org/jira/browse/RPT-5391 (MM)
Autopush to Cloud
| Jira Legacy |
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| server | Genomics Platform JIRA |
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| serverId | 69f1c57f-69eb-3638-9293-3b540a90b0e4 |
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key | https://gpinfojira.broadinstitute.org/jira/browse/RPT-5358 (Nasko, Chris)
Peltier logs
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| server | Genomics Platform JIRA |
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| columns | key,summary,type,created,updated,due,assignee,reporter,priority,status,resolution |
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| serverId | 69f1c57f-69eb-3638-9293-3b540a90b0e4 |
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| key | RPT-5361 |
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https://gpinfojira.broadinstitute.org/jira/browse/RPT-5361 (RAS)
Seq plating report in Tableau (KC)
| Jira Legacy |
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| server | Genomics Platform JIRA |
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| columns | key,summary,type,created,updated,due,assignee,reporter,priority,status,resolution |
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| serverId | 69f1c57f-69eb-3638-9293-3b540a90b0e4 |
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key | https://gpinfojira.broadinstitute.org/jira/browse/RPT-5485Somatic Exome (AB)
RPT-5218 - New LCSET type for Twist aka "Somatic Exome" (AB)
RPT-5629 - Reporting for Twist Somatic Exome (MM)
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Germline Exome improvements
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(AB, RAS)
https://gpinfojira.broadinstitute.org/jira/browse/RPT-5431
Financial Reporting
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| server | Genomics Platform JIRA |
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| columns | key,summary,type,created,updated,due,assignee,reporter,priority,status,resolution |
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| serverId | 69f1c57f-69eb-3638-9293-3b540a90b0e4 |
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| key | RPT-5311 |
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https://gpinfojira.broadinstitute.org/jira/browse/RPT-5311 (ZL) (complete until we go live)
Other
ULP & Duplex Consensus calling report (CG)
https://gpinfojira.broadinstitute.org/jira/browse/SUPPORT-4829
DEPENDENCIES
GPLIM-6127
GPLIM-6126
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