General
Create a troubleshooting guide for PDMs/PMs/Analytics to use to determine what is broken (pipeline, ETL, DM refresh, etc)/ Missing data tool ("Where's my data?") (AM/MM/RAS)
https://gpinfojira.broadinstitute.org/jira
server | Genomics Platform JIRA |
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columns | key,summary,type,created,updated,due,assignee,reporter,priority,status,resolution |
serverId | 69f1c57f-69eb-3638-9293-3b540a90b0e4 |
key | RPT-4927 |
https://gpinfojira.broadinstitute.org/jira/browse/RPT-5574
Mariela and Rafael are working on this, Nasko is helping.
ETL Resiliency (AM)
https://gpinfojira.broadinstitute.org/jira/browse/RPT-5522
Expand dependency visualizer to be useful (e.g. for use in troubleshooting guide) (RAS)
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https://gpinfojira.broadinstitute.org/jira/browse/RPT-5317
Need to meet with AM and KC to review usefulness
Samples
Sample Initiation in Mercury: Datamarts and Tableau (KC, RAS)
Jira Legacy
https://gpinfojira.broadinstitute.org/jira/browse/RPT-5390
Ticket TBD for other Pico work once pico is moved to Mercury. KC still a part of those conversations.
Extractions in Mercury: Datamarts and Tableau (KC, MM, RAS) (LIMS dependencies are mitigated with fix in QA 6/19)
Jira Legacy
https://gpinfojira.broadinstitute.org/jira/browse/RPT-5449
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CRSP kits sent/received, data into Tableau
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https://gpinfojira.broadinstitute.org/jira/browse/RPT-4290
Workflow has been defined for CRSP. Now we need to determine whether/where the data are in the MercuryDW. PRIORITY TBD
Non-CRSP Mercury receipt in Tableau
Jira Legacy
This should be doable using event_fact? received vs imported?
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New Product Development
Quality
Lab Instrument QC (AB)
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https://gpinfojira.broadinstitute.org/jira
server | Genomics Platform JIRA |
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columns | key,summary,type,created,updated,due,assignee,reporter,priority,status,resolution |
serverId | 69f1c57f-69eb-3638-9293-3b540a90b0e4 |
key | RPT-5355 |
Sequencing Technology
3/4 QCs are in Tableau. One waiting for Mercury
Tracking Bravo QC (AB) NOTE: THIS WON'T BE THIS Q
https://gpinfojira.broadinstitute.org/jira/browse/RPT-5355
Sequencing Technology
Broad West: Show new parsed SAV data in Tableau (KC, RAS)
Jira Legacy
Data are ready for visualization. It can't be the same report as BroadEast bc data structure is different (e.g. no organic run) but a simple monitoring report should be easy. Early Q1.
Jira Legacy
Autopush Autopush to Cloud
Jira Legacy
Peltier Peltier logs
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Seq plating report in Tableau (KC)
Jira Legacy
Somatic Exome
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Financial Reporting
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(AB)
RPT-5218 - New LCSET type for Twist aka "Somatic Exome" (AB)
RPT-5629 - Reporting for Twist Somatic Exome (MM)
Germline Exome improvements (AB, RAS)
https://gpinfojira.broadinstitute.org/jira/browse/RPT-5431
Financial Reporting
https://gpinfojira.broadinstitute.org/jira/browse/RPT-5311 (ZL) (complete until we go live)
Other
ULP & Duplex Consensus calling report (CG)
https://gpinfojira.broadinstitute.org/jira/browse/SUPPORT-4829
DEPENDENCIES
GPLIM-6127
GPLIM-6126
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