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- Does the report title follow the guidelines?
- Does the summary focus on results and does not include any references to figures, tables, or citations?
- Are all parameters of the pipeline mentioned in the report marked up with "asParameter“asParameter()"”?
- Are all values of parameters mentioned in the report marked up with "asValue“asValue()"”?
- Are all links in the report generated with "asLink“asLink()"”?
- Are all filenames mentioned in the report marked up with "asFilename“asFilename()"”, in particular in the "Input" “Input” section.
- Are tables referred to using "asReference“asReference( myTable )"”?
- Are figures referred to using "asReference“asReference( myFigure )"”?
- Are citations referred to using "asReference“asReference( myCitation )"”?
- Do figure and table captions describe the variable names used in column headers and as axis labels?
- Do figures that potentially might get large (wider than 800 pixels) have a link to the "High“High-Res" Res” image?
- Does the report use nomenclature as agreed:
- miR - Not: microRNA or miRNA
- Is "writeReport“writeReport()" ” being called without "debug “debug=TRUE"TRUE”?