...
- None
- Check if Mercury DWH and Mercury Run API still do not agree about the plated sample. If they don't - seek help from Mercury team. If they match, a refresh of the flowcell should correct it. BSP exported samples might be associated with the wrong PDO in BSP_Plated_samples because the mapping in BSP is not accurate. If it is important to fix the data , BSP team could help and then request a refresh for the affected plated sample as instructed in the recipe on this page to update BSP Plating DM. Finally, make sure to refresh in PDO Star5 if it won't happen automatically.
- If there is data for Indexed or Unindexed on metrics.basecall_analysis, then the flowcell needs to be refreshed in the datamarts. Otherwise, make ticket for the Pipeline and refer to PO-13231 as being the same issue.
- PDOs created within past year will get refreshed on Friday 2:55 am or Analytics manually refresh for faster data delivery. PDOs older than 1 year MUST be manually refreshed. See instructions for PDOSTAR5 refresh in Checking metadata changes.
| Info |
|---|
To view Mercury Run API, add run_name to the end of this query (after 'runName='): https://mercury.broadinstitute.org:8443/Mercury/rest/IlluminaRun/query?runName=190725_SL-NVM_0088_AHKYJVDSXX |
Readgroup Metadata refreshes with upstream data change
...