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“per-barcode” metrics are supported by converting multiple “consensusreadset.xml“ files into JSONs and then merging these into a single “synthetic JSON-array“. These can be recognized by checking for trailing “*” at the end of “domain” field.
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This is special domain derived from the “apiRoot:/runs/UUID” API, where the “dataModel” field is extracted (turns out it’s an XML), converted into JSON and recorded in PACBIO datamart as “API/runDataModel“ domain. This data is also available in the “DATAROOT/*/*/*.run.metadata.xml“ domain however it would show up there later when cell “movies” start, etc.
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“API/runDataModel/RecordedEvents” domain
Bunch of intrihuing “recorded events” were unearthed from PacBio’s dataModel. These are captured into the new “API/runDataModel/RecordedEvents” domain. Particularly interesting is the "AcquisitionInitializeInfo" event which apparently provides "reagent info" among others (see below)
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How files are scraped from the file system - the linux voodoo magic
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