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“per-barcode” metrics are supported by converting multiple “consensusreadset.xml“ files into JSONs and then merging these into a single “synthetic JSON-array“. These can be recognized by checking for trailing “*” at the end of “domain” field.
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For a given cell and domain, if ETL comes across multiple files then it will naturally merge these into JSON-array.
However this logic is not sufficient if there is only 1 barcode registered per cell - therefore a list of exemption file-types (ccs.report.json) is kept to instruct the ETL to always merge these into JSON-array regardless of number of files.
Metrics extracted through
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PacBio API
Turns out some information is not available the JSON/XML files but can be extracted through the SMRTLink endpoints. Few new domains have been added: “API/runs” and “API/collections”
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