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“domain” is synthetic field derived from the location of original file being captured. It’s basically the location where these random UUIDs are masked out.
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CROMWELL/sl_collection_reports/*/call-pbreports_barcode/execution/barcode.report.json CROMWELL/sl_collection_reports/*/call-pbreports_barcode/execution/per_barcode_reports.datastore.json CROMWELL/sl_collection_reports/*/call-pbreports_barcode/execution/per_barcode_reports/*/dataset_stats.json* CROMWELL/sl_collection_reports/*/call-pbreports_barcode/execution/task-report.json CROMWELL/sl_dataset_reports/*/call-import_dataset_reports/execution/adapter.report.json CROMWELL/sl_dataset_reports/*/call-import_dataset_reports/execution/ccs.report.json* CROMWELL/sl_dataset_reports/*/call-import_dataset_reports/execution/control.report.json CROMWELL/sl_dataset_reports/*/call-import_dataset_reports/execution/detect_cpg_methyl.report.json CROMWELL/sl_dataset_reports/*/call-import_dataset_reports/execution/loading.report.json CROMWELL/sl_dataset_reports/*/call-import_dataset_reports/execution/raw_data.report.json CROMWELL/sl_dataset_reports/*/call-import_dataset_reports/execution/task-report.json* DATAROOT/*/*/*.5mc_report.json DATAROOT/*/*/*.ccs_reports.json DATAROOT/*/*/*.consensusreadset.xml DATAROOT/*/*/*.lima_guess.json DATAROOT/*/*/*.metadata.xml DATAROOT/*/*/*.run.metadata.xml DATAROOT/*/*/*.sts.xml DATAROOT/*/*/*.unbarcoded.consensusreadset.xml DATAROOT/*/*/*/*.*.consensusreadset.xml* |
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“per-barcode” metrics are supported by converting multiple “consensusreadset.xml“ files into JSONs and then merging these into a single “synthetic JSON-array“. These can be recognized by checking for trailing “*” at the end of “domain” field.
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