Table of Contents | ||||
---|---|---|---|---|
|
...
Code Block |
---|
SELECT a.run_name, a.cell_well, a.movie, c."raw_data_report.insert_n50" FROM pacbio a, json_table(DATA, '$[*]' COLUMNS( "raw_data_report.insert_n50" NUMBER PATH '$."etl.attributes"."raw_data_report.insert_n50".value' )) AS c WHERE site_id=3 AND a.domain='CROMWELL/sl_dataset_reports/*/call-import_dataset_reports/execution/raw_data.report.json' AND a.run_name='r64386e_20220523_180557' AND a.cell_well='4_D01' |
Additionally, couple of JSON documents are synthetically generated by the ETL at the “root” level. These might be useful for cross-reference purposes and can be seen via the “root” super-JSON
https://analytics.broadinstitute.org/pacbioMetrics/3/r64386e_20220523_180557/root/superjson
“per-bacrode” support
“per-barcode” metrics are supported by converting multiple “consensusreadset.xml“ files into JSONs and then merging these into a single “synthetic JSON-array“. These can be recognized by checking for trailing “*” at the end of “domain” field.
...